使用Rstudio的GEOquery包的GEOget函数下载GEO数据出现超时报错

Question

我使用Rstudio的GEOquery包的GEOget函数下载GEO数据总是出现超时的报错

``gds <- getGEO("GSE86505" , destdir = "./")
Error in open.connection(x, "rb") : 
  Timeout was reached: Resolving timed out after 10000 milliseconds

求大神解答下怎么解决这个问题，蟹蟹辣

Answer 1

运行这个试试呢

suppressMessages(library(GEOquery))

library(Biobase)
options( 'download.file.method.GEOquery' = 'libcurl' )
gds <- getGEO("GSE86505" , destdir = "./",AnnotGPL = FALSE,getGPL = FALSE)#输出路径为默认，不下载大的GPL数据
save(gset,file = 'GSE86505.gset.Rdata')

参考源自：
https://www.jianshu.com/p/b665a3de2154
http://www.bio-info-trainee.com/3719.html