weixin_39942191
2020-11-22 03:47 阅读 1

imported data-library datasets are not displayable and downloadable

I have a strange issue with datasets downloaded from a data library. All items in our data library are symlinked via path and can be imported. The imported datasets can be used by tools and in workflows.

However, these datasets can not be viewed and can not be downloaded (not from the history and not from the data library). I see different behaviours from different files. E.g. this link is visible http://galaxy.uni-freiburg.de/datasets/ae7eca43c36ad114/display/?preview=True but this one not: http://galaxy.uni-freiburg.de/datasets/ae7eca43c36ad114/display/.

I get this error in Galaxy (no stack trace in the logs): The requested URL /datasets/ae7eca43c36ad114/display/ was not found on this server.

We tried to not symlink data into a data library and it seems to work. So this can mean it is a problem with handling of symlinks in the data libraries.

该提问来源于开源项目:galaxyproject/galaxy

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6条回答 默认 最新

  • weixin_39632467 weixin_39632467 2020-11-22 03:47

    Thanks for the report. What version are you at?

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  • weixin_39942191 weixin_39942191 2020-11-22 03:47

    16.04, latest git.

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  • weixin_39632467 weixin_39632467 2020-11-22 03:47

    Thanks. Is this the first time you used this feature and observe this behaviour? Did you just update from 16.01?

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  • weixin_39942191 weixin_39942191 2020-11-22 03:47

    No it worked before. We just updated recently, but I can not say for sure it worked with 16.01. Usually you just import data and run things on it .. which still works. Just downloading and looking at these data is broken.

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  • weixin_39703982 weixin_39703982 2020-11-22 03:47

    Our production server is still on 16.01, and I'm able to see and download a fasta file imported from our linked data sets. Also tested on our pre-production server, which is on 16.04, and had no issues. Possible I may not be duplicating your conditions exactly. Let me know if I can help further.

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  • weixin_39632467 weixin_39632467 2020-11-22 03:47

    I am closing this since I was not able to replicate it. If you can, please let me know and I will gladly reopen.

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