weixin_39765695
weixin_39765695
2020-12-09 02:27

Dp trinity

Trinity now builds on linux (but not Mac), and test_tools succeeds on travis. I ran trinity's own test_Trinity_Assembly on my broad account and all tests passed.

I have NOT added a trinity test to our test suite. Don't know if you have something in mind.

I have not looked over your changes to assembly.py or assembly.rules; I don't know if you are ready to submit them.

该提问来源于开源项目:broadinstitute/viral-ngs

  • 点赞
  • 写回答
  • 关注问题
  • 收藏
  • 复制链接分享
  • 邀请回答

5条回答

  • weixin_39629969 weixin_39629969 5月前

    Coverage Status

    Coverage increased (+1.3%) when pulling 1d65c661094a5aa55028d461eb6616b2b43d2da6 on dp-trinity into d521f455fb580f26167bba5a7f2453f790d3d00f on master.

    点赞 评论 复制链接分享
  • weixin_39564036 weixin_39564036 5月前

    Hm.. seems to be working today mostly. I have an unconfirmed suspicion that maybe it's an issue of running out of disk space on the Travis VM (BLAST and Trinity tools and the bmtagger test indexes are really huge...). Maybe we should do some sort of post-cleanup after tool installation of unnecessary stuff (source trees, etc). But we can do that in some other branch/pull. Merging this for now.

    点赞 评论 复制链接分享
  • weixin_39629969 weixin_39629969 5月前

    Coverage Status

    Coverage increased (+1.28%) when pulling 3229d7037dba8bc860d4fd8d33efac8a0c2ff638 on dp-trinity into 4a0d7d2e616a987da51094ad6e5c74b8bc96db18 on master.

    点赞 评论 复制链接分享
  • weixin_39629969 weixin_39629969 5月前

    Coverage Status

    Coverage increased (+1.24%) when pulling 2728272541d1d17eb28c0b38af3bf9fe3e7e0943 on dp-trinity into 3cbc0a2bfb3c5c9d13414922dbfdb5aafd51156d on master.

    点赞 评论 复制链接分享
  • weixin_39564036 weixin_39564036 5月前

    I'm happy with the changes to assembly.py and assembly.rules, but I'm really puzzled why TestBmtagger.setUp is now failing on python 3 only, even though there were no changes that I can tell to any of the Bmtagger stuff until my latest commit. I also checked the original source URL at NCBI and it doesn't appear that any of those files have recent dates on them. Your last commit on the dp-trinity branch passed in Travis, but the pull-request of the same commit onto master failed, but master hasn't changed since the branch was born....

    点赞 评论 复制链接分享

相关推荐