bin_trim_galore=trim_galore
dir='~/bioinfo/rna/data01/srr/clean/'
cat $1 |while read id
do
arr=(${id})
fq1=${arr[0]}
fq2=${arr[1]}
$bin_trim_galore -q 25 --phred33 --stringency 3 --paired -o $dir $fq1 $fq2
done
~
~
~
sh文件如上图,bash之后就提示
Multicore support not enabled. Proceeding with single-core trimming.
Path to Cutadapt set as: 'cutadapt' (default)
Cutadapt seems to be working fine (tested command 'cutadapt --version')
Cutadapt version: 3.2
single-core operation.
Unable to create directory ~/bioinfo/rna/data01/srr/clean/ No such file or directory
是我dir设置的问题吗,是~还是/的问题?