Magento did not render the code only once. The problem was that canvas event listener always assumed that pointer coordinates were wrong. Since canvas is the first element of the page(because it is the first element in that .phtml file), event listener assumed it will be displayed at the top, but that was not the case because of the way magento page rendering works.
This issue was resolved simply by measuring the height of content above canvas and just mathematically subtracting that from pointers position before passing it to event listener.
The problem with this solution is that it works only for single page or with multiple pages that have the same height of content above canvas(=>same design). If anyone knows a way in which person would not need to "recalculate" the height for every single page that has different design, sharing knowledge would be much appreciated.