在编译gromacs331时,遇到了这几个error,求助!
编译如下:
tar -xf ../gromacs-3.3.1.tar.gz
cd gromacs-3.3.1
cp ../pme-IL-kinetic-mt.c src/mdlib/pme.c
cp ../types_TPL.h src/mdlib/
patch -p1 < ../gromacs-3.3.1-thrpool.diff
autoreconf -if && ./configure && make -j 8
错误如下:
make[3]: *** [Makefile:604: mdrun] Error 1
make[3]: *** Waiting for unfinished jobs....
libtool: link: gcc -g -O2 -o tpbconv readir.o toputil.o topdirs.o add_par.o topexcl.o tpbconv.o -lpthread ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl -lfftw3f -lm -lX11
libtool: link: gcc -g -O2 -o pdb2gmx hizzie.o xlate.o specbond.o ter_db.o h_db.o genhydro.o pdb2top.o gen_ad.o gen_vsite.o pgutil.o resall.o hackblock.o add_par.o topexcl.o toputil.o topdirs.o pdb2gmx.o -lpthread ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl -lfftw3f -lm -lX11
libtool: link: gcc -g -O2 -o protonate hackblock.o ter_db.o h_db.o genhydro.o pgutil.o resall.o add_par.o topexcl.o toputil.o topdirs.o protonate.o -lpthread ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl -lfftw3f -lm -lX11
libtool: link: gcc -g -O2 -o luck luck.o -lpthread ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl -lfftw3f -lm -lX11
libtool: link: gcc -g -O2 -o gmxdump gmxdump.o -lpthread ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl -lfftw3f -lm -lX11
libtool: link: gcc -g -O2 -o gmxcheck gmxcheck.o tpbcmp.o -lpthread ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl -lfftw3f -lm -lX11
libtool: link: gcc -g -O2 -o x2top toppush.o nm2type.o pdb2top.o gen_ad.o gen_vsite.o pgutil.o resall.o hackblock.o add_par.o topexcl.o toputil.o topdirs.o x2top.o -lpthread ../mdlib/.libs/libmd.a ../gmxlib/.libs/libgmx.a -lnsl -lfftw3f -lm -lX11
make[3]: Leaving directory '/mnt/d/gromacs1/gromacs-3.3.1/src/kernel'
make[2]: *** [Makefile:400: all-recursive] Error 1
make[2]: Leaving directory '/mnt/d/gromacs1/gromacs-3.3.1/src'
make[1]: *** [Makefile:339: all] Error 2
make[1]: Leaving directory '/mnt/d/gromacs1/gromacs-3.3.1/src'
make: *** [Makefile:428: all-recursive] Error 1