huoguopaojiao1 2022-10-09 22:34 采纳率: 0%
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r语言中单细胞处理的错误

,用r的这个安装包的问题怎么办, SeuratWrappers包都已经装上了,Seurat也显示装上了但就是有
#Integration: batch effects in scRNA-seq data are corrected by matching mutual nearest neighbors.

scRNA.CD4T <- RunFastMNN(object.list = scRNA.list)
Package batchelor is not yet installed
Install now?

1: yes
2: no

Selection: yes
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
CRAN: https://cran.rstudio.com/

Bioconductor version 3.16 (BiocManager 1.30.18), R 4.2.1 (2022-06-23)
Computing 2000 integration features
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/scuttle/libs/scuttle.so':
dlopen(/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/scuttle/libs/scuttle.so, 0x0006): Library not loaded: '/opt/R/arm64/gfortran/lib/libgfortran.5.dylib'
Referenced from: '/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/scuttle/libs/scuttle.so'
Reason: tried: '/opt/R/arm64/gfortran/lib/libgfortran.5.dylib' (no such file), '/usr/local/lib/libgfortran.5.dylib' (no such file), '/usr/lib/libgfortran.5.dylib' (no such file)
In addition: Warning message:
package(s) not installed when version(s) same as current; use force = TRUE to re-install: 'batchelor'

我的解答思路和尝试过的方法
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1条回答 默认 最新

  • Dr_90li 2022-10-11 22:44
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    我也遇到这个问题,找到解决办法了吗?你的应该是苹果M1或M2的机器吧

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