ArchR在linux的anaconda部署R环境下安装

Question

问题遇到的现象和发生背景

您好，我在您的教程“使用ArchR分析单细胞ATAC-seq数据(第一章)（https://blog.csdn.net/u012110870/article/details/106328674）”下载安装ArchR，我的R环境是配置在anaconda环境中的，按照您所说的，下载好了devtools和Bio，然后在下载ArchR是，出现报错，想请教您一下应该怎么安装，如有打扰万分抱歉

用代码块功能插入代码，请勿粘贴截图

> if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")
> if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
> devtools::install_github("GreenleafLab/ArchR", ref="master", repos = BiocManager::repositories())
Downloading GitHub repo GreenleafLab/ArchR@master
Error in utils::download.file(url, path, method = method, quiet = quiet,  : 
  download from 'https://api.github.com/repos/GreenleafLab/ArchR/tarball/master' failed
> devtools::install_github("GreenleafLab/ArchR", ref="master", repos = BiocManager::repositories())
Error: Failed to install 'ArchR' from GitHub:
  Timeout was reached: [api.github.com] Proxy CONNECT aborted due to timeout
> options("repos"=c(CRAN="https://mirrors.tuna.tsinghua.edu.cn/CRAN/"))
> devtools::install_github("GreenleafLab/ArchR", ref="master", repos = BiocManager::repositories())
Downloading GitHub repo GreenleafLab/ArchR@master
Error in utils::download.file(url, path, method = method, quiet = quiet,  : 
  download from 'https://api.github.com/repos/GreenleafLab/ArchR/tarball/master' failed
> Sys.setenv(CONDA_BUILD_SYSROOT="/")
> devtools::install_github("GreenleafLab/ArchR", ref="master", repos = BiocManager::repositories())
Downloading GitHub repo GreenleafLab/ArchR@master
Error in utils::download.file(url, path, method = method, quiet = quiet,  : 
  download from 'https://api.github.com/repos/GreenleafLab/ArchR/tarball/master' failed

运行结果及报错内容

Downloading GitHub repo GreenleafLab/ArchR@master
Error in utils::download.file(url, path, method = method, quiet = quiet,  : 
  download from 'https://api.github.com/repos/GreenleafLab/ArchR/tarball/master' failed

Error: Failed to install 'ArchR' from GitHub:
  Timeout was reached: [api.github.com] Proxy CONNECT aborted due to timeout

我的解答思路和尝试过的方法

我试着用官方文档中的流程安装，发现不能成功，于是在conda安装了devtools，之后再R中安装了BiocManager，但在安装ArchR时出现报错，换源选择中科大的也没有下载成功，于是我从GitHub下载了ArchR并上传，下载得到的文件是.zip格式，也没有安装成功

我想要达到的结果

在anaconda配置的R中成功安装ArchR并运行

Answer 1

原文和链接打开都没有内容了，建议还是按照步骤一步步下载安装
【在anaconda配置的R中成功安装ArchR并运行】
基于Ubuntu 16.04的Linux操作系统
1、Anaconda安装及R环境配置：http://wjhsh.net/xiaofeiIDO-p-11911113.html
2、ArchR官网教程学习笔记1安装ArchR：Getting Started with ArchR：https://www.jianshu.com/p/a2bcdfb77961